Installation Instructions Software lab

1. Download and install IGV(https://igv.org/doc/desktop/), which will be required to visualize the sequence alignment performed in the lecture

sudo apt install igv

2. Set up a conda environment ( see instructions https://www.anaconda.com/docs/getting-started/miniconda/install)

3. Create the conda environment with the environment file provided (environment file):

conda env create -f enviroment/sose_enviroment.yml

4. Install jupyter notebook and set the conda environment kernel

conda install -c conda-forge ipykernelsource activate {environment_name}python -m ipykernel install --user --name={environment_name};